Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0746495 with 2 members (SH3 and PX domains 2B)

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Sauria / Lepidosauria /

... /

Episquamata / Toxicofera / Serpentes / Colubroidea /

Elapidae

Completeness score: 1.00

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This HOG has 25 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0746495	300	162	SH3 and PX domains 2B
2	HOG:E0628915	14	39	Derived by automated computational analysis using gene prediction method Gnomon
3	HOG:E0746495.2b	4	2	SH3 and PX domains 2B
4	HOG:E0746495.2a	4	2	SH3 and PX domains 2B
5	HOG:E0746495.1b	4	2	SH3 and PX domains 2B
6	HOG:E0746495.1a	4	2	SH3 and PX domains 2B
7	HOG:E0790935.1a	3	15	Sh3 and px domain-containing protein
8	HOG:E0763715	2	4	-
9	HOG:E0746495.3b	2	1	SH3 and PX domains 2B
10	HOG:E0746495.3a	2	1	SH3 and PX domains 2B
11	HOG:E0630754	2	19	SH3 domain-containing kinase-binding protein
12	HOG:E0343335	2	5	Actin cytoskeleton-regulatory complex protein SLA1
13	HOG:E0832018.1b	1	43	SH3 domain-containing protein
14	HOG:E0793315.2a.1a	1	3	signal transducing adaptor molecule
15	HOG:E0790935	1	17	Sh3 and px domain-containing protein
16	HOG:E0678515	1	2	SH3 and PX domains 2Aa
17	HOG:E0645819	1	7	SH3 domain-containing kinase-binding protein
18	HOG:E0616008	1	4	-
19	HOG:E0538694	1	3	-
20	HOG:E0401768.2a	1	2	Meiotically up-regulated protein Msb1/Mug8 domain-containing protein
21	HOG:E0322945	1	2	Uncharacterized protein
22	HOG:E0322915	1	2	domain-containing protein
23	HOG:E0317876.1c.2b.2b	1	60	formin-like protein
24	HOG:E0277268.5b.9c	1	2	Cell wall hydroxyproline-rich glycoprotein
25	HOG:E0232776.1a	1	1	FH2

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